Life's Colonists: Bacteria & Archaea

Overview

 

"Bacteria are so widespread ... They may be found on the tops of mountains, the bottom of the deepest oceans, in the guts of animals, and even in the frozen rocks and ice of Antarctica. One feature that has enabled them to spread so far, and last so long is their ability to go dormant for an extended period."

-- Museum of Paleontology, University of California at Berkeley

Bacteria are single celled microorganisms that lack a nuclear membrane. While it is perhaps easy to think of them as simple forms of life, the truth of the matter is that they are highly adaptable. Their normally rapid reproduction rate (by binary fission) and high capacity for spontaneous mutation allows them to respond to changing environments readily. This has made them ubiquitous in the biosphere, both as free-living forms and as parasites in multicellular forms of life.

Up until recently, the Archaea were considered part of Bacteria - the original term is "archaeabacteria" (ancient bacteria). Now it is generally accepted that the Archaea form a "third branch" of life, along with Bacteria, a.k.a. Prokaryotes, and the Eukaryotes - lifeforms with cells that have nuclei. The contemporary technique of "RNA dating" - analysis of relative lineage by comparison of RNA - appears to put the Archaea closest to the putative originator lifeform.

The Archaea are found in extreme environments, including the high temperature ocean hydrothermal vent habitats. In addition, it has recently been shown that they are widespread in the open ocean, evidencing the great success of this branch of life.

Scientists Classify New Form of Life
"Hot on the heels of NASA's discovery on the possibility of life on Mars, comes the announcement by scientists from the Institute for Genomic Research that a third major branch of life has been confirmed.
Called "Archaea" (from the ancient Greek word meaning 'ancient'), it joins the other two domains of life: Bacteria, and Eukaryotes (everything else, including us)."
-- ScienceWeb, 8/23/96



Links

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Bacteria

Introduction to Bacteria
Fossil record - Life history and ecology - Systematics - Morphology
--Museum of Paleontology, University of California at Berkeley

Life History and Ecology of Bacteria
"Bacteria are so widespread that it is possible only to make the most general statements about their life history and ecology. They may be found on the tops of mountains, the bottom of the deepest oceans, in the guts of animals, and even in the frozen rocks and ice of Antarctica. One feature that has enabled them to spread so far, and last so long is their ability to go dormant for an extended period."
-- Museum of Paleontology, University of California at Berkeley

Lectures on Bacteria
Online course
-- Biological Sciences Department/ Environmental Biotechnology Institute, California Polytechnic State University

Nanobacteria
"Nannobacteria are very small living creatures in the 0.05 to 0.2 micrometer range. They are enormously abundant in minerals and rocks, and probably run most of the earth’s surface chemistry. Although I conjecture that they form most of the world’s biomass, they remain "biota incognita" to the biological world as their genetic relationships, metabolism, and other characteristics remain to be investigated."
-- naturalSCIENCE World Wide Web Journal, 1997

Bacteria - the space colonists
"On April 20, 1967, the unmanned lunar lander Surveyor 3 landed near Oceanus Procellarum on the surface of the moon. One of the things aboard was a television camera. Two-and-a-half years later, on November 20, 1969, Apollo 12 astronauts Pete Conrad and Alan L. Bean recovered the camera. When NASA scientists examined it back on Earth they were surprised to find specimens of Streptococcus mitis that were still alive."
-- Cosmic Ancestry, private site

Symposium on Evolution of hydrothermal ecosystems on Earth (and Mars?)
Held at the Ciba Foundation, London, January 30–February 1 1996
-- The Novartis Foundation (scientific and educational charity)

Breaking Through To Understanding Global Climate Change
"Bacteria, among the most plentiful organisms in the ocean, are also among the least understood sea life. Only in the last 15 years have scientists begun to unlock the mystery of their relationship with the oceans and the Earth's atmosphere. In recent years, some research has focused on the latter issue, particularly how microscopic bacteria are involved in the regulation of atmospheric carbon dioxide-a gas produced in large amounts by the burning of fossil fuels and tied to global warming."
-- College of William and Mary

Scientists Unravel DNA of Bacteria
"Scientists have traced the entire genetic roadmap of one of the most heat-tolerant bacterium known. "
-- ABCNews.com, 3/25/98

Bacteria millions of years old can be brought back to life
"California Polytechnic State University microbiology professor Raul Cano ... some of his students, and Ambergene Corp. of San Carlos have revived more than 1,200 types of bacteria and other one-celled organisms as old as 135 million years."
-- Cal Poly, San Luis Obispo, 1994

How Old Did You Say Those Bacteria Were? Honest?
"Cano says he has succeeded in dormant bacteria from ancient bees (some are shown here). The bacteria apparently survived as spores (defined) inside the gut of a bee from amber found in the Dominican Republic."
-- The Why Files, updated 5/1/98

An Introduction to Bacterial Identification
General principles concerning bacterial identification
-- Department of Bacteriology, University of Wisconsin-Madison

Archaea

Archaebacteria--A Life Form On Mars?
"The Three Major Types Of Archaebacteria:1. Methanogens (methane producers) --responsible for swamp gas. 2. Extreme Thermophiles--live in hot springs and black smokers. 3. Extreme Halophiles--live in saturated brine and salt crust."
-- Private website

Archaea: A Laboratory Manual
"Although the Archaea are prokaryotes, lacking a nuclear membrane and possessing a single circular chromosome, they possess several molecular properties with similarity to the eukaryotes ... Their unique phylogeny is underscored by a predilection for extreme environments which include high temperature, high salt, and strictly anaerobic conditions ... unique biomolecular adaptations have recently generated interest in the areas of genetic variability and genome evolution, extremely thermostable enzymes, such as DNA polymerases for PCR, methanogenesis as an alternative fuel source, anaerobic bioremediation, and use of bacteriorhodopsin for production of a biocomputer chip ..."
-- Cold Spring Harbor Laboratory

What are the three main groups of archaebacteria? How are they different?
-- Course notes, Biology 116, Northwestern Michigan College

Prehistoric Bacteria
From the depths of the earth, a hot stream flows from the lava dome inside the crater of Mount St. Helens.
-- Volcano World, University of North Dakota

Introduction to the Archaea
"The Domain Archaea wasn't recognized as a major domain of life until quite recently, largely through the work of Dr. Carl Woese and his colleagues at the University of Illinois. Archaeans don't look that different from most bacteria under the microscope; since most of them are extremely difficult to culture, their unique place among living organisms long went unrecognized. However, biochemically and genetically, they are as different from bacteria as you are."
-- Museum of Paleontology, University of California at Berkeley

Methanogenic archaea (archaebacteria)
"Our research is focused on the ultrastructure and biochemistry of methanogenic archaea (archaebacteria). The archaea are the third domain of life separate and distinct from bacteria (eubacteria) and eukaryotes."
-- Methanogen Research Group, Department of Microbiology and Immunology, Queen's University, Kingston, Canada

Archaeabacteria
"Scientists believe they have discoverd what *may* be a *third* branch -- comprised of microbes known as "Archaea." Vast populations of these organisms have been discovered in the most unlikely places and their mere existence is challenging the traditional theories of life and how it came to be."
-- Japan High-Tech Satellite Network, 5/20/96

Living Fossils
"Archaea are microscopic organisms found in hot springs and hot water vents on the ocean floor -- and also in cooler ocean waters. Geneticists have been fascinated by these creatures for a couple of decades. They consider the archaea to be a sort of "missing link" in our understanding of Earth's earliest life forms."
-- Earth and Sky, 10/27/95

Third Branch of Life Bares Its Genes
"... scientists announced that they have finished sequencing all the genes of the deep-sea microbe, a crucial step in comprehending how the unusual microorganisms, known as Methanococcus jannaschii, flourish without using sunlight, oxygen, or any surrounding organic material."
-- ScienceNewsOnline, 8/24/96

Triumph of the Archaea
BACTERIA; PROKARYOTES; DNA; EUKARYOTES; NUCLEUS; WOESE/CARL; AUTHOR: ZIMMER, CARL
-- Discover, February, 1995 (From Washington and Lee University Science Library)

'Rare' Bug Dominates the Oceans
BACTERIA; MICROBIOLOGY; MARINE ECOLOGY; PROKARYOTES; ARCHAEBACTERIA
-- New Scientist, November 19, 1994 (From Washington and Lee University Science Library)

Microbiology

Bio132a General Microbiology
-- Brandeis University

Microbial Genomes Project
These microbial genome pages were created as a reference for the community and contain a list of current or completed eubacterial, archaeal and eukaryotic genome sequencing projects. Each main page includes the name of the organism being sequenced, which sequencing group(s) are involved in the effort, background information on the organism, and its current evolutionary location on the tree of life.

-- National Center for Genome Resources

Microbial Diversity
College course lectures
-- Department of Microbiology - North Carolina State University

Information about Microbiology for the Public
"The Bacteriology Web Site has a collection of information that could be interesting to the curious visitor of our site."
-- Department of Bacteriology, University of Wisconsin-Madison

Medical Microbiology & references (college course site)
Bacteriology 330 Home Page, Host-Parasite Interactions
-- Department of Bacteriology, University of Wisconsin-Madison

Medical Microbiology
Online book
-- Graduate School of Biomedical Sciences, University of Texas Medical Branch

Microbiology An Introduction
Online book
-- Benjamin/Cummings Science

Molecular and Applied Microbiology
Course outline (BBS3010), including lectures on Archaea
-- School of Biomolecular & Biomedical Sciences, Griffith University, Australia

Digital Learning Center for Microbial Ecology
"The Digital Learning Center for Microbial Ecology (DLC-ME) is a science education project ... to use computers and network technologies to provide students and teachers interested in microbiology and microbial ecology with resources that may aid their learning and teaching."
-- Michigan State University

Microbial Underground
Medical, Microbiological and Molecular Biological material, with links to other such material on the internet ... On-Line Course in Medical Bacteriology
-- Private website

Microbial ecology and microbial degradation of hazardous contaminants
Contemporary use of microbial sciences
-- Microbial Biogeochemistry Group, Oak Ridge National Laboratory

Microbial Genome Pages
"These microbial genome pages were created as a reference for the community and contain a list of current or completed eubacterial, archaeal and eukaryotic genome sequencing projects. Each main page includes the name of the organism being sequenced, which sequencing group(s) are involved in the effort, background informati n on the organism, and its current evolutionary location on the tree of life."
-- National Center for Genome Resources

Popularizations

Bugs in the News
Popularization
-- Department of Microbiology, University of Kansas

Microbe Zoo
DirtLand - Animal Pavillion - Snack Bar - Space Adventure - WaterWorld - Safari Hut
-- Michigan State University

Bacteria - systematics

Major Groups of Prokaryotes
Overview of Bacteria and Archaea
-- University of Wisconsin-Madison Department of Bacteriology

Eubacteria
Listing of Bacteria
-- Freie Universitaet Berlin, Fachbereich Chemie

Archaea
Listing of Archaea
-- Freie Universitaet Berlin, Fachbereich Chemie

Introduction to the Viruses
"In 1898, Friedrich Loeffler and Paul Frosch found evidence that the cause of foot-and-mouth disease in livestock was an infectious particle smaller than any bacteria. This was the first clue to the nature of viruses, genetic entities that lie somewhere in the grey area between living and non-living states."
-- Museum of Paleontology, University of California at Berkeley

 


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